Blast2GO functions are seamlessly integrated within the workbench. All mayor functions can be accessed via the Blast2GO section in the Toolbox.
The sequence table is the main view of a Blast2GO Project, where each row represents a sequence. Colors indicate the status of each sequence, starting from white (without analysis results), to orange, green, blue, etc. (see figure below). The sequence table also offers a context menu with several additional options for each individual sequence, like (blast result details, sequence information, manual annotation modifications, etc.).
Figure 1: Different color codes indicating the status of the sequences